Example.
The power series $f(x)=\sum_{n=1}^\infty (2^{m_2(n)+1}-1)x^n$, where $m_2(n)$ is the multiplicity of the factor $2$ of $n$ (the $2$-adic order of $n$), diverges for all $x\neq 0$. As $f(x)-2f(x^2)=x+x^2+x^3+\cdots=x/(1-x)$ for $|x|<1$, its iterated elementary Ramanujan sum is $1/2$ (definition, also here).
The Dirichlet series $F(s)=\sum_{n=1}^\infty (2^{m_2(n)+1}-1)n^{-s}$ converges in the half-plane $\sigma>2$. It takes the form
$$
F(s)=\frac{1}{1-2^{1-s}}\zeta(s)
$$
(here).
Therefore, $F(0)=-\zeta(0)=1/2$.
Edit.
Change notation: $f_2(x)=f(x)$, $f_1(x)=x+x^2+x^3+\cdots $ and
$f_0(x)=x-x^2+x^3-\cdots $.
We know that $f_0(x)=x/(1+x)$ for $|x|<1$ is Abel summable to
$\sum_{n=1}^\infty (-1)^{n+1}=1/2$ at $x=1$ (Grandi series)
(here),
$f_1(x)-2f_1(x^2)=f_0(x)$ and $f_2(x)-2f_2(x^2)=f_1(x)$.
In general, for $f(x)=\sum_{n=0}^\infty a_n x^n$, $f^{(N)}(x)$ is defined by
$$
f^{(N)}(x)=\left(x\frac{d}{dx}\right)^N f(x)~.
$$
We have $f_1^{(N)}(x)-2^{N+1}f_1^{(N)}(x^2)=f_0^{(N)}(x)$ and
$f_2^{(N)}(x)-2^{N+1}f_2^{(N)}(x^2)=f_1^{(N)}(x)$.
We know that the elementary Ramanujan sum of $f_1^{(N)}(x)$ at $x=1$ is
$$
f_1^{(N)}(1)=\frac{f_0^{(N)}(1)}{1-2^{N+1}}=\zeta(-N)~.
$$
The iterated elementary Ramanujan sum of $f_2^{(N)}(x)$ at $x=1$ is
$$
f_2^{(N)}(1)=\frac{f_1^{(N)}(1)}{1-2^{N+1}}=\frac{1}{1-2^{1+N}}\zeta(-N)
=F(-N)
$$
(also here).