Assume I have a function $f = f(y, \phi(y,x))$ and I want to calculate $\frac{\partial f}{\partial y}$, I use the chain rule to get
\begin{equation} \frac{\partial f}{\partial y} = \frac{\partial f}{\partial y} + \frac{\partial f}{\partial \phi}\frac{\partial \phi}{\partial y} \end{equation}
but obviously the $\frac{\partial f}{\partial y}$ represent different things on each side of equality. How do I explain this? I'm guessing it is a notational issue.
Edit: Just to give some context why this troubles me. Here $x_i$ refers to the ith component of the vector $\mathbf{x}$ in euclidean space. In an acoustic textbook the Lighthill stress tensor $T_{ij}$ is involved in the following identity:
\begin{equation} \frac{\partial}{\partial x_i} \frac{T_{ij}(\mathbf{y},t-|\mathbf{x}-\mathbf{y}|/c)}{|\mathbf{x}-\mathbf{y}|} = \frac{\frac{\partial T_{ij}}{\partial y_i}}{|\mathbf{x}-\mathbf{y}|} - \frac{\partial}{\partial y_i} \frac{T_{ij}(\mathbf{y},t-|\mathbf{x}-\mathbf{y}|/c)}{|\mathbf{x}-\mathbf{y}|} \end{equation}
This can only be resolved if the numerator in the term $\frac{\frac{\partial T_{ij}}{\partial y_i}}{|\mathbf{x}-\mathbf{y}|}$ is given a different interpretation...Just try showing this:
Let $t-|\mathbf{x}-\mathbf{y}|/c = \phi(t,\mathbf{x}, \mathbf{y})$
\begin{array}{lcl} \frac{\partial}{\partial x_i} \frac{T_{ij}(\mathbf{y},\phi)}{|\mathbf{x}-\mathbf{y}|} & = & \frac{1}{|\mathbf{x}-\mathbf{y}|} \frac{\partial}{\partial x_i}T_{ij}(\mathbf{y},\phi) + T_{ij}(\mathbf{y},\phi) \frac{\partial}{\partial x_i} \frac{1}{|\mathbf{x}-\mathbf{y}|} \\ & = & \frac{1}{|\mathbf{x}-\mathbf{y}|} (\frac{\partial T_{ij}}{\partial \phi}\frac{\partial \phi}{\partial x_i}) + T_{ij}(\mathbf{y},\phi) \frac{\partial}{\partial x_i} \frac{1}{|\mathbf{x}-\mathbf{y}|}\\ & = & -\frac{1}{|\mathbf{x}-\mathbf{y}|} (\frac{\partial T_{ij}}{\partial \phi}\frac{\partial \phi}{\partial y_i}) + T_{ij}(\mathbf{y},\phi) \frac{\partial}{\partial x_i} \frac{1}{|\mathbf{x}-\mathbf{y}|} \end{array}
\begin{array}{lcl} \frac{\partial}{\partial y_i} \frac{T_{ij}(\mathbf{y},\phi)}{|\mathbf{x}-\mathbf{y}|} & = & \frac{1}{|\mathbf{x}-\mathbf{y}|} \frac{\partial}{\partial y_i}T_{ij}(\mathbf{y},\phi) + T_{ij}(\mathbf{y},\phi) \frac{\partial}{\partial y_i} \frac{1}{|\mathbf{x}-\mathbf{y}|} \\ & = & \frac{1}{|\mathbf{x}-\mathbf{y}|} ( \frac{\partial}{\partial y_i}T_{ij} +\frac{\partial T_{ij}}{\partial \phi}\frac{\partial \phi}{\partial y_i}) - T_{ij}(\mathbf{y},\phi) \frac{\partial}{\partial x_i} \frac{1}{|\mathbf{x}-\mathbf{y}|} \end{array}
Adding up the last line from each expression gives the result.