Disclaimer: This is just a computational answer but it gives a formula for at least for the case $k=2$ (and other small cases too). And it's too long for a comment.
I get these values for $f(k, n) = $ the number of these solvable sequence pairs
$$
\displaystyle \left(\begin{array}{rrrrrrrrr}
1 & 1 & 1 & 1 & 1 & 1 & 1 & 1 & 1 \\
4 & 11 & 26 & 57 & 120 & 247 & 502 & 1013 & 2036 \\
9 & 46 & 180 & 603 & 1827 & 5164 & 13878 & 35905 & 90189 \\
16 & 130 & 750 & 3507 & 14224 & 52068 & 176430 & 562925 & 1711776 \\
25 & 295 & 2345 & 14518 & 75558 & 346050 & 1436820 & 5520295 & 19916039 \\
36 & 581 & 6076 & 48006 & 311136 & 1739166 & 8665866 & 39387491 & 166049884 \\
49 & 1036 & 13776 & 135114 & 1065834 & 7132620 & 41957058 & 222437215 & 1082436355 \\
64 & 1716 & 28260 & 336666 & 3173808 & 25034724 & 171535650 & 1048436675 & 5829137600 \\
81 & 2685 & 53625 & 762399 & 8461167 & 77655435 & 612837225 & 4275850150 & 26924807910
\end{array}\right)
$$
Calculation done with a Markov chain (code here).
The idea: We start building the two sequences by adding a term to each at a time. We keep as a state $(m, M)$ where $m$ is the maximum of the minimums and $M$ is the maximum of the maximums in the sequences so far. An example: let the sequences be
$$
(2,1,3,7) \\
(0,2,2,4)
$$
Then the path of the $(m, M)$'s is $(0,0), (0,2), (1,2), (2,3), (4,7)$. It always starts from $(0,0)$ (when the sequences are empty). Then we append $x_1=2, x_2=0$, we get $m=\min(x_1, x_2) = 0$ and $M=\max(x_1, x_2) = 2$. Then append $x_1=1, x_2=2$ (notice, these need to satisfy $\min(x_1, x_2) \geq m$ and $\max(x_1, x_2) \geq M$) and get $(m,M) = (2,3)$. And so on.
This leads to the following: there is a transition from $(m_1, M_1)$ to $(m_2, M_2)$ if $m_1\leq m_2$ and $M_1\leq M_2$. And it is of weight $1$ if $m_2=M_2$, because in that case only $x_1=x_2$ is possible, otherwise we can flip them and get weight $2$ transition (weight meaning the number of ways that lead to that transition). Also the "transition" -matrix $A$ has a nice block structure with respect to the blocks determined by value of $m$ in the state. And I wonder if that can be used for faster calculation of $f(k, n) = e_1^T A^n \bf 1$.
For example for $k=3$ we get the following directed graph (with edge labels indicating how many pairs of numbers lead to that transition)
To get the value $f(k, n)$ we count the number of $n$-walks on the graph starting from $(0,0)$. (Regard as there being multiple edges between the vertices when edge label $>1$)
For $k=2$ the graph is particularly simple and we get that $f(2, n)$ is the sum of the first row of
$$
\displaystyle \left(\begin{array}{rrr}
1 & 2 & 1 \\
0 & 2 & 1 \\
0 & 0 & 1
\end{array}\right)^n
$$
and that equals $2^{n+2}-n-3$.
Finding the Jordan normal form for the involved matrix (code here), I was able to find the formulas
$$\begin{align}
f(3, n) &= \frac{1}{2}(n+2)(2^{n+2}(n-1)+n+5) \\
f(4, n) &= \frac{1}{6}(n+2)(n+3)(2^{n}(2n^2-2n+8) -n -7 ) \\
f(5, n) &= \frac{1}{72}(n+2)(n+3)(n+4)(2^n(2n^3+22n-24)+3n+27) \\
f(6,n) &= \frac{1}{720} (n + 2) \dots (n + 5) (2^n(n^{4} + 2n^{3} + 23 n^{2} - 26 n +72) - 6 n - 66)
\end{align}$$
These seem to indicate some sort of pattern.
For $k=7,8,\dots, 12$ we have that $\frac{f(k, n)}{n+k-1\choose k-2}$ is
$$ \begin{aligned}
&\frac{1}{180} (2^n(n^{5} + 5 n^{4} + 45 n^{3} - 5 n^{2} + 314 n -360) + 30 n + 390) \\
&\frac{1}{1260} (2^n(n^{6} + 9 n^{5} + 85 n^{4} + 135 n^{3} + 994 n^{2} - 1224 n + 2880) - 180 n - 2700) \\
&\frac{1}{10080} (2^n(n^{7} + 14 n^{6} + 154 n^{5} + 560 n^{4} + 2989 n^{3} - 574 n^{2} + 17016 n - 20160 ) + 1260 n + 21420) \\
&\frac{1}{90720} (2^n(n^{8} + 20 n^{7} + 266 n^{6} + 1568 n^{5} + 8729 n^{4} + 11900 n^{3} + 71644 n^{2} - 94128 n + 201600) - 10080 n - 191520) \\
&\frac{1}{907200} (2^n(n^{9} + 27 n^{8} + 438 n^{7} + 3654 n^{6} + 23961 n^{5} + 71883 n^{4} + 294272 n^{3} - 75564 n^{2} + 1495728 n - 1814400) + 90720 n + 1905120) \\
&\frac{1}{9979200} (2^n(n^{10} + 35 n^{9} + 690 n^{8} + 7590 n^{7} + 60753 n^{6} + 281715 n^{5} + 1193660 n^{4} + 1453060 n^{3} + 7816896 n^{2} - 10814400 n + 21772800) - 907200 n - 20865600)
\end{aligned}
$$
EDIT:
Looking at the block structure of the transition matrix, here's for example $k=4$:
$$A_4 = \left(\begin{array}{rrrr|rrr|rr|r}
1 & 2 & 2 & 2 & 1 & 2 & 2 & 1 & 2 & 1 \\
0 & 2 & 2 & 2 & 1 & 2 & 2 & 1 & 2 & 1 \\
0 & 0 & 2 & 2 & 0 & 2 & 2 & 1 & 2 & 1 \\
0 & 0 & 0 & 2 & 0 & 0 & 2 & 0 & 2 & 1 \\
\hline
0 & 0 & 0 & 0 & 1 & 2 & 2 & 1 & 2 & 1 \\
0 & 0 & 0 & 0 & 0 & 2 & 2 & 1 & 2 & 1 \\
0 & 0 & 0 & 0 & 0 & 0 & 2 & 0 & 2 & 1 \\
\hline
0 & 0 & 0 & 0 & 0 & 0 & 0 & 1 & 2 & 1 \\
0 & 0 & 0 & 0 & 0 & 0 & 0 & 0 & 2 & 1 \\
\hline
0 & 0 & 0 & 0 & 0 & 0 & 0 & 0 & 0 & 1
\end{array}\right)
$$
I was able to come up with this $O(nk^2)$ algorithm.
We need to find $A^n \bf 1$ (its first component is the solution). Do this by initializing the vector $v_0 = \bf 1$ and iteratively computing $v_{j+1} = Av_j$. Start the computation of $v_{j+1}$ from the last component upwards and notice that the row $i$ of the matrix is mostly equal (in the blocks to the left of the diagoal one) to the corresponding row one block-level below. (To see why this is true look at the states $(m, M)$ and $(m, M+1)$). Now to do the computation, keep a running total for the current diagonal block and add the rest from the corresponding (already calculated) value from $v$.