I am learning the variational calculation of Yang Mills functional, but I can't understand 2 steps in the following calculation:
Given a variation of the connection $A$ in local coordinates: $A\to A+\delta A$. Recall that $$F_{jk}=-(\partial_j A_k-\partial_k A_j+A_jA_k-A_kA_j)$$ So, \begin{equation}\begin{split}\delta F_{jk}=&-(\partial_j\delta A_k-\partial_k\delta A_j+\delta A_j\cdot A_k+A_j\delta A_k-\delta A_k\cdot A_j-A_k\delta A_j)=\\=&-(\partial_j\delta A_k+A_j\delta A_k-\delta A_k\cdot A_j-(\partial_k\delta A_j+A_k\delta A_j-\delta A_j A_k)=\\=&-(\nabla_j\delta A_k-\nabla_k\delta A_j)\end{split}\end{equation} Thus, let $I$ be the Yang-Mills functional of $F$, then \begin{equation} \begin{split} \delta I=&\delta\int_X\left\langle F,F\right\rangle=2\int_X\left\langle\delta F,F\right\rangle=\\ =&2\int_X(\nabla_j\delta A_k-\nabla_k\delta A_j)g^{jl}g^{km}F_{ml}=\\ =&2\int_X-\delta A_k\cdot g^{km}\nabla^lF_{ml}+\delta A_j g^{jl}\nabla^mF_{ml}=\\ =&4\int_X\delta A_k\cdot g^{km}\nabla^lF_{lm} \end{split} \end{equation}
To begin with, I don't understand why $$2\int_X\left\langle\delta F,F\right\rangle=2\int_X(\nabla_j\delta A_k-\nabla_k\delta A_j)g^{jl}g^{km}F_{ml}$$ is true: it seems to me that since $F\in \Gamma(End(E)\otimes \bigwedge^2T^*M, M)$, a metric for $F$ should include both factors representing metric for $\bigwedge^2T^*M$ and factors representing metric for $End(E)$. I think $g^{jl}$ and $g^{km}$ are factors for metric of $\bigwedge^2 T^*M$, but where is the factors for the metric on $End(E)$?
Besides this, I also don't understand why $$2\int_X(\nabla_j\delta A_k-\nabla_k\delta A_j)g^{jl}g^{km}F_{ml}=2\int_X-\delta A_k\cdot g^{km}\nabla^lF_{ml}+\delta A_j g^{jl}\nabla^mF_{ml}.$$ There is a remark on my note that says this is due to integration by parts, but I only know integration by parts for integration on $\mathbb{R}^1$ and doesn't know what version of integration by parts should I use here. Besides this confusion on applying integration by parts, I also don't seem to understand the definition of $\nabla^m F_{ml}$.
Many thanks in advance!