I am having this quandary over unitary transformation and probability density functions in quantum mechanics. I thought this was the adequate place to post it, but feel free to tell me if you think otherwise.
As I am sure you are all aware, in quantum mechanics it is quite common to have unitary operators acting on wave-functions (these being elements of the Hilbert space $L^2(\mathbb{R}^3, \mathbb{C}^4)$, for concreteness). These wave-functions play a crucial role because \begin{equation} \rho:=|\psi|^2=\sum_{k=1}^{4}|\psi_{k}|^2 \end{equation} where $\psi_{k}$ denote the components of $\psi$, can be interpreted as probability density functions. Note $\rho$ is the norm of the wave-function $\psi$ as a vector (and not as an element of $L^2(\mathbb{R}^3, \mathbb{C}^4)$). Now, under a unitary transformation $U$ (i.e. a map from $L^2(\mathbb{R}^3, \mathbb{C}^4)$ to itself that is self-adjoint), $\psi$ is turned into $\phi:=U\psi$ and therefore \begin{equation} |\phi|^2=\langle \phi, \phi \rangle=\langle U\psi, U\psi\rangle \end{equation} where $\langle\cdot,\cdot \rangle$ is the dot product of two vectors, and not the dot product in $L^2(\mathbb{R}^3, \mathbb{C}^4)$. My question is: are these two quantities related in some way? Obviously since $U$ is unitary the $L^2(\mathbb{R}^3, \mathbb{C}^4)$ inner product is preserved and $\|\psi\|_{L^2(\mathbb{R}^3, \mathbb{C}^4)}=\|\phi\|_{L^2(\mathbb{R}^3, \mathbb{C}^4)}$ but that is very far from implying that $|\phi|=|\psi|$.
To be a bit more specific (I think otherwise there's no hope of saying anything about $|\phi|$ and $|\psi|$, but correct me if I am wrong), the unitary transformation $U$ has the form of a Fourier multiplier i.e. $U=\mathcal{F}^{-1}u\mathcal{F}$ where $\mathcal{F}$ is the Fourier transform (acting component-wise) and $u$ is a unitary matrix (I am not if that makes it a unitary map from $L^2(\mathbb{R}^3, \mathbb{C}^4)$ to itself). Thus $|\mathcal{F}\phi|=|\mathcal{F}\psi|$ (and $\|\mathcal{F}\phi\|_{L^2(\mathbb{R}^3, \mathbb{C}^4)}=\|\mathcal{F}\psi\|_{L^2(\mathbb{R}^3, \mathbb{C}^4)}$ but that we already knew by Plancherel’s theorem). Again does not imply that $|\phi|=|\psi|$. I am bit confused.
Any help will be much appreciated. thanks, and stay safe!