I feel slightly embarrassed to ask this, but I've managed to thoroughly confuse myself about the following.
Consider $\mathbb{R}^2$ together with the lattice $\Lambda=\{(n,m): n,m\in \mathbb{Z}\}$.
Clearly, the torus $\mathbb{T}^2=\mathbb{R}^2/\Lambda$ admits the obvious flat metric that makes it a square torus. Geometrically, this corresponds to taking the fundamental domain $[0,1]\times [0,1]$ with the metric $dx^2+dy^2$ and identifying the appropriate sides.
My confusion is that one could also think of the domain given by the parallelogram $\{(x,y): 0\leq y \leq 1, y\leq x \leq y+1\}$ (i.e. determined by the elements $(1,0)$ and $(1,1)$ that also generate the lattice). If I understand things correctly, on this domain the metric $dx^2+dy^2$ would induce a different metric on the quotient given by identifying the appropriate sides than the metric you would get by taking the appropriate quotient metric (which here would correspond to $dx^2-dxdy-dydx+2dy^2$).
This is causing me some confusion and doubt about how well I actually understand the situation.
I guess for a concrete question: Is there something special about the square as a fundamental domain that makes the quotient metric given by identifying opposite sides agree with the quotient metric of the lattice? Or am I misunderstanding things?