"$\beta$-model" is really a term which lives most happily in the context of theories of second-order arithmetic such as $\mathsf{Z_2}$ or $\mathsf{RCA_0}$, so I'll start by treating it there. Note that despite the terminology, theories of second-order arithmetic are first-order theories (yes, this is really annoying).
Suppose I have a structure $\mathcal{M}$ in the (first-order!) language of second-order arithmetic. This $\mathcal{M}$ consists of:
A numbers sort $\mathbb{Num}_\mathcal{M}$.
A sets sort $\mathbb{Set}_\mathcal{M}$.
Some structure on the above sorts - distinguished elements $0_\mathcal{M},1_\mathcal{M}\in\mathbb{Set}_\mathcal{M}$, binary functions $+_\mathcal{M},\times_\mathcal{M}$ on $\mathbb{Num}_\mathcal{M}$, a binary relation $<_\mathcal{M}\subseteq\mathbb{Num}_\mathcal{M}\times\mathbb{Num}_\mathcal{M}$, and a binary relation $\in_\mathcal{M}\subseteq\mathbb{Num}_\mathcal{M}\times\mathbb{Set}_\mathcal{M}$. (There's some flexibility here of course.)
We'll additionally require that $\mathcal{M}$ satisfy some basic properties (e.g. extensionality, commutativity of $+$ and $\times$, etc.). If you're familiar with the basic terminology of reverse math, it's more than enough for what follows to demand that $\mathcal{M}\models\mathsf{RCA_0}$; if you're not familiar with that, just assume that $\mathcal{M}$ isn't too weird. Finally, it will be convenient to assume that elements of $\mathbb{Set_\mathcal{M}}$ literally are subsets of $\mathbb{Num}_\mathcal{M}$ and that $\in_\mathcal{M}$ is just $\in$.
We can ask how "correct" $\mathcal{M}$ is in comparison to the standard model. There are various ways to do this. The simplest is to just look at the "numbers sort." We say that $\mathcal{M}$ is an $\color{red}{\mbox{$\omega$-model}}$ iff $$(\mathbb{Num}_\mathcal{M};0_\mathcal{M},1_\mathcal{M},+_\mathcal{M},\times_\mathcal{M},<_\mathcal{M})\cong(\mathbb{N};0,1,+,\times,<).$$ Note that there are lots of non-isomorphic $\omega$-models out there since this is only a restriction on the numbers sort of the model; an $\omega$-model is determined, up to isomorphism, by a set of sets of natural numbers. For example, the set $\mathsf{REC}$ of recursive sets yields one $\omega$-model (satisfying $\mathsf{RCA_0}$ but not $\mathsf{ACA_0}$, for example) while the set $\mathsf{ARITH}$ of arithmetical sets yields another (satisfying $\mathsf{ACA_0}$ but not $\mathsf{ATR_0}$, for example).
However, we often want a lot more correctness than this. $\mathcal{M}$ is a $\color{red}{\mbox{$\beta$-model}}$ iff $\mathcal{M}$ is correct about well-foundedness: hiding an implicit appeal to an ordered pairing function, if $A\subseteq\mathbb{Num}_\mathcal{M}^2$ is ill-founded and $A\in\mathbb{Set_\mathcal{M}}$ then there is some $B\in\mathbb{Set}_\mathcal{M}$ which is nonempty and has no $A$-least element.
Taking $A=<_\mathcal{M}$ we see that every $\beta$-model is an $\omega$-model. The converse however is false: $\mathsf{REC}$ for example is not a $\beta$-model since there are computable linear orders which are not well-ordered but do not have computable descending sequences. In fact, every $\beta$-model satisfies the rather strong (but still first-order!) theory $\mathsf{ATR_0}$. This can all be found in the relevant section of Simpson's book Subsystems of second-order arithmetic.
What if we want to talk about $\beta$-models outside the context of two-sorted arithmetic?
Well, in general we need to specify:
There are some subtleties here! For example, if $\mathcal{M}$ is a well-founded model of $\mathsf{KP}$ (a particular fragment of $\mathsf{ZFC}$), then a binary relation $A\in \mathcal{M}$ is a genuine well-ordering iff it admits in $\mathcal{M}$ an isomorphism with some ordinal; on the other hand, ill-founded binary relations in $\mathcal{M}$ need not have descending sequences in $\mathcal{M}$. I've said more about this here.
So in general we have to be careful how we use the term "$\beta$-model" outside of its original context. Indeed, note that the discussion linked in your post led to the realization that there are at least two candidates for what "$\beta$-model of $\mathsf{NF}$" should mean (see the follow-up here).