Joyal and Tierney's 1984 monograph, An extension of the Galois theory of Grothendieck, is an example of a substantial piece of mathematics written using informal reasoning in internal logic. The main result is the following:
Theorem. Every open surjection of toposes is an effective descent morphism. In particular, every Grothendieck topos is equivalent to the category of equivariant sheaves on a localic groupoid.
If you look at Chapter I, you will find that reads just like any other mathematical text, save for the avoidance of classical logic and certain kinds of set-theoretic operations. The main difficulty with using internal logic is the interpretation of the conclusions – this requires much care! For example, the proposition scheme
$$(\forall b : B . \exists a : A . f(a) = b) \to (\forall h : B^T . \exists g : A^T . h = g \circ f)$$
where $B$ is fixed but $f : A \to B$ and $T$ are allowed to vary, says that "if $f$ is surjective, then for any $h : T \to B$, there exists $g : T \to B$ such that $h = g \circ f$", or in short, "$B$ is a projective object"... but in the canonical semantics, it is neither necessary nor sufficient that $B$ be projective for the statement to hold! That is because what the formula actually means is the following,
If $f : A \to B$ is an epimorphism, then $f^T : A^T \to B^T$ is also an epimorphism.
whereas $B$ being projective is the statement below:
If $f : A \to B$ is an epimorphism, then $\mathrm{Hom}(T, f) : \mathrm{Hom}(T, A) \to \mathrm{Hom}(T, B)$ is a split surjection of sets.
If the topos in question has a projective terminal object, then the first statement (internal projectivity) implies the second, and if the topos is well-pointed, then the second statement implies the first.
So much for projective objects. What about finitely generated modules? Again there are subtleties, but the most straightforward way to formulate it is to take a mixed approach. Let $R$ be an internal ring. Then $M$ is a finitely-generated $R$-module if there exist global elements $m_1, \ldots, m_n$ (i.e. morphisms $1 \to M$) such that
$$\forall m : M . \exists r_1 : R . \cdots . \exists r_n : R . m = r_1 m_1 + \cdots + r_n m_n$$
holds in the internal logic. This amounts to saying that the evident homomorphism $R^{\oplus n} \to M$ is an epimorphism, which is what we want. It is tempting to formulate the whole statement internally, but this cannot work: at best one will obtain an internal characterisation of modules that are locally finitely generated.
Perhaps I should give a positive example. I'm afraid I can't think of anything interesting, so I'll opt for something simple instead. It is well-known that a two-sided unit element of a magma is unique if it exists. This is also true for internal magmas in any topos, and the proof is exactly the same (so long as it is formulated directly). More explicitly:
Let $M$ be a magma. Suppose $u$ is a left unit element in $M$ and $v$ is a right unit element in $M$. Then, $u = u v = v$.
Formally, we are deducing that
$$\forall u : M. \forall v : M. (\forall m : M. u m = m) \land (\forall m : M. m v = m) \to (u = v)$$
which means that, for all $u : S \to M$ and $v : T \to M$, if $\mu \circ (u \times \mathrm{id}_M) = \pi_2$ and $\mu \circ (\mathrm{id}_M \times v) = \pi_1$, then $u \circ \pi_1 = v \circ \pi_2$ as morphisms $S \times T \to M$.
Now, suppose we have an internal magma $M$ for which
$$\exists u : M . \forall m : M. (u m = m) \land (m u = m)$$
holds in the internal logic, i.e. there exists a morphism $u : T \to M$ satisfying the relevant equations, such that the unique morphism $T \to 1$ is an epimorphism. (The latter is the true content of the quantifier $\exists$.) We wish to show that $M$ has a global unit element, i.e. a morphism $e : 1 \to M$ satisfying the obvious equations. Applying the above result in the case $u = v$, we deduce that $u$ must factor through the coequaliser of $\pi_1, \pi_2 : T \times T \to T$. But this coequaliser computes the coimage of the unique morphism $T \to 1$, and we assumed $T \to 1$ is an epimorphism, so $T \to 1$ is itself the coequaliser of $\pi_1$ and $\pi_2$. Thus $u$ factors through $1$ (in a unique way), yielding the required $e : 1 \to M$.
Of course, the above paragraph takes place in the external logic, but this is unavoidable: there is no way to formulate the existence of a global element in the internal logic. I suppose the point is that, once you have built up a stock of these metatheorems that interpret statements in the internal logic, you can then prove various results using internal logic if so desired.