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I am trying to apply the Jackknife method to compute confidence intervals for data collected from Monte Carlo simulations. My understanding is that to counter the effect of autocorrelations I should bin my data in a "leave $n$ out" fashion, then by varying the number of bins I find the resulting errors for various bin sizes and look for where they converge to a maximum value. For example, from this book there is this plot (figure 13.27):

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where the lower dotted line represents the error calculated assuming all measurements are independent, and the upper line is larger by a factor of $\sqrt{1 + 2\tau}$ where $\tau$ is the autocorrelation time and represents the true error. The Jackknife errors converge near this result when the bins are around 100-1000.

However, for large data sets, there are many possible bin sizes to test, and this can become extremely computationally expensive. If I have 10,000 data points and I a bin size of 100, then I have to construct 100 bins each with 9,900 data points, and if I am checking many possible bin sizes this takes way too long. So I am trying to find an optimal way to approximate the correct bin size, I can't seem to find any information about this process online.

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  • $\begingroup$ Treat the error as a function $f(x)$. Solve for $f(x) = 0$ with secant method? I hope $f(x)$ is smooth ... Can you find the derivative of $f(x)$ and then solve with Newton's method? For testing bin size, can you use only a subset of the data points? $\endgroup$ – R zu Sep 30 '18 at 0:58
  • $\begingroup$ My understanding is that it is not a smooth function of bin size, sometimes you find outliers which are significantly above the "true value". $\endgroup$ – Kai Sep 30 '18 at 16:30

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