An additional resource which I found was useful for this problem are those slides:
http://www3.dicca.unige.it/rrepetto/linked-files/fluid-dynamics-lecture-notes.pdf
The appendix (Slide 154 - 156) it explains the topic as well.
The approach there is as follows:
$$J=\operatorname{det}\left(\begin{array}{ccc}\frac{\partial x_{1}}{\partial \xi_{1}} & \frac{\partial x_{1}}{\partial \xi_{2}} & \frac{\partial x_{1}}{\partial \xi_{3}} \\ \frac{\partial x_{2}}{\partial \xi_{1}} & \frac{\partial x_{2}}{\partial \xi_{2}} & \frac{\partial x_{2}}{\partial \xi_{3}} \\ \frac{\partial x_{3}}{\partial \xi_{1}} & \frac{\partial x_{3}}{\partial \xi_{2}} & \frac{\partial x_{3}}{\partial \xi_{3}}\end{array}\right)$$
Definition of the material derivative:
$$\frac{D}{D t}\left(\frac{\partial x_{i}}{\partial \xi_{j}}\right)=\frac{\partial}{\partial \xi_{j}} \frac{D x_{j}}{D t}=\frac{\partial u_{i}}{\partial \xi_{j}}$$
Apply the chain rule:
$$\frac{\partial u_{i}}{\partial \xi_{j}}=\frac{\partial u_{i}}{\partial x_{1}} \frac{\partial x_{1}}{\partial \xi_{j}}+\frac{\partial u_{i}}{\partial x_{2}} \frac{\partial x_{2}}{\partial \xi_{j}}+\frac{\partial u_{i}}{\partial x_{3}} \frac{\partial x_{3}}{\partial \xi_{j}}=\frac{\partial u_{i}}{\partial x_{k}} \frac{\partial x_{k}}{\partial \xi_{j}}$$
As an example for the first row, insert the previous results:
$$ \operatorname{det}\left(\begin{array}{ccc}
\frac{\partial u_{1}}{\partial x_{k}} \frac{\partial x_{k}}{\partial \xi_{1}} & \frac{\partial u_{1}}{\partial x_{k}} \frac{\partial x_{k}}{\partial \xi_{2}} & \frac{\partial u_{1}}{\partial x_{k}} \frac{\partial x_{k}}{\partial \xi_{3}} \\
\frac{\partial x_{2}}{\partial \xi_{1}} & \frac{\partial x_{2}}{\partial \xi_{2}} & \frac{\partial x_{2}}{\partial \xi_{3}} \\
\frac{\partial x_{3}}{\partial \xi_{1}} & \frac{\partial x_{3}}{\partial \xi_{2}} & \frac{\partial x_{3}}{\partial \xi_{3}}
\end{array}\right)
$$
Simplify the result:
$$ \operatorname{det} = \left(\begin{array}{ccc}\frac{\partial u_{1}}{\partial x_{1}} \frac{\partial x_{1}}{\partial \xi_{1}} & \frac{\partial u_{1}}{\partial x_{1}} \frac{\partial x_{1}}{\partial \xi_{2}} & \frac{\partial u_{1}}{\partial x_{1}} \frac{\partial x_{1}}{\partial \xi_{3}} \\ \frac{\partial x_{2}}{\partial \xi_{1}} & \frac{\partial x_{2}}{\partial \xi_{2}} & \frac{\partial x_{2}}{\partial \xi_{3}} \\ \frac{\partial x_{3}}{\partial \xi_{1}} & \frac{\partial x_{3}}{\partial \xi_{2}} & \frac{\partial x_{3}}{\partial \xi_{3}}\end{array}\right)=\frac{\partial u_{1}}{\partial x_{1}}J$$