This is more of a comment than an answer, but it is too long to be a comment. Take my opinion with a grain of salt.
You ask what properties make the gauge integral "less useful" than the others. This is really several questions: "useful" in terms of pedagogy? in terms of how its ideas generalize? in terms of the theorems it provides in the context it was designed for (I think, standard calculus in one variable or in $\mathbb{R}^n$)? And "usefulness" is such a fuzzy and contentious notion... but we don't need to go there.
In the context for which it was designed, is certainly less well known, less widely documented in textbooks, and certainly less taught than the Riemann or Lebesgue integrals, and it seems to me that your "usefulness" question is really about this. You're guessing, quite reasonably, that there must be some mathematical or pedagogical reason why Calculus I/II/III or Analysis I/II/III at University X is almost guaranteed to study another integral and not the gauge integral.
Well, I don't think there is any logical reason for this.
But there isn't a pressing need for the gauge integral, either. Its benefits, whether technical (in getting theorems with fewer hypotheses) or pedagogical (some feel it is easier to learn or to teach), do not seem to be enough to outweigh historical tradition. And it is really just a question of tradition.
It's a bit like asking why the USA doesn't use the metric system. In each case, there isn't any abstract reason why people don't do it, and if history could be replayed with different initial conditions, things might have been done differently.
The strength of tradition would be more of a surprise if the "technical advantages" of the gauge integral were more pronounced in relation to what is already in wide use. A huge factor in the adoption of the Lebesgue integral was all of its nice properties (e.g. completeness of the $L^p$ spaces, the dominated convergence theorem) that made analysis involving integrals possible, and on a firm logical footing, in ways that it really wasn't before. Speaking informally, I think 99% of what humanity wants out of integrals was taken care of with these advances. Of course the next thing that comes along can't offer as dramatic a change, so nobody cares to switch.
The chief "added advantage" of the gauge integral (or at least the one most often mentioned) is its more general "fundamental theorem of calculus." IMHO this sounds much better than it actually is. I'm an analyst and every time I've ever used the FTC, theorems about older integrals were enough; there was simply no need for more.
Unless you feel "having the best FTC possible" is a key property an integral should have... but analysis is full of statements that are easy theorems under restrictive hypotheses, and harder theorems under more general hypotheses, and often there is an epsilon of stuff left over, not covered by the standard tricks, where the statement is still true. Statements about interchanging limiting operations (e.g. differentiation under the integral) are classic examples; the truth boundary is so often unknown--- or it is so difficult or unrewarding to formulate useful "if and only if" conditions under which the statement is a theorem, that nobody bothers to do it. From this view, it's not surprising that there is a better FTC than the Lebesgue FTC, and it's not surprising that there is not a movement to correct this "defect".
So that's my take: people don't use the gauge integral because it is our heritage to use other integrals. These other integrals do most of the same things, and the gauge integral isn't so much better that people switch. And once we know why most experts don't use it... we know why it's generally not taught to anybody. [The pedagogical case for or against any integral of your choosing is a completely separate issue.]