I know I'm very late in this thread, but please allow me to share my method. It's a bit more easier to come up with, if I do say so myself...
First, I manipulate the integral to a more friendly form. Namely,
$\require{AMScd}$
\begin{align*}
I&=\int_0^{\infty}{\left[ \frac{\tanh \left( x \right)}{x^3}-\frac{1}{x^2\cosh ^2\left( x \right)} \right] \mathrm{d}x}
\\&
=\int_0^{\infty}{\frac{\tanh \left( x \right) -x}{x^3}\mathrm{d}x}+\int_0^{\infty}{\frac{\sinh ^2\left( x \right)}{x^2\cosh ^2\left( x \right)}\mathrm{d}x}
\\&
\stackrel{\mathrm{I.B.P}}{\begin{CD}@=\end{CD}}\left. \frac{x-\tanh \left( x \right)}{2x^2} \right|_{0}^{\infty}-\frac{1}{2}\int_0^{\infty}{\frac{\sinh ^2\left( x \right)}{x^2\cosh ^2\left( x \right)}\mathrm{d}x}+\int_0^{\infty}{\frac{\sinh ^2\left( x \right)}{x^2\cosh ^2\left( x \right)}\mathrm{d}x}
\\&
=\frac{1}{2}\int_0^{\infty}{\frac{\sinh ^2\left( x \right)}{x^2\cosh ^2\left( x \right)}\mathrm{d}x}\stackrel{\mathrm{I.B.P}}{\begin{CD}@=\end{CD}}\left. -\frac{\sinh ^2\left( x \right)}{2x\cosh ^2\left( x \right)} \right|_{0}^{\infty}+\int_0^{\infty}{\frac{\sinh \left( x \right)}{x\cosh ^3\left( x \right)}\mathrm{d}x}
\\&
=\int_0^{\infty}{\frac{\sinh \left( x \right)}{x\cosh ^3\left( x \right)}\mathrm{d}x}
\end{align*}
Then, I define $I(t)$, and use leibniz rule on it.
\begin{align*}
I\left( t \right) &\stackrel{\mathrm{def}}{=} \int_0^{\infty}{\frac{\sinh \left( tx \right)}{x\cosh ^3\left( x \right)}\mathrm{d}x}
\\
I'\left( t \right) &=\int_0^{\infty}{\frac{\cosh \left( tx \right)}{\cosh ^3\left( x \right)}\mathrm{d}x}
\stackrel{e^{-x}=s}{\begin{CD}@=\end{CD}}4\int_1^{\infty}{\frac{s^t+s^{-t}}{s\left( s+s^{-1} \right) ^3}\mathrm{d}x}
\\&
\stackrel{s\rightsquigarrow \frac{1}{s}}{\begin{CD}@=\end{CD}}4\int_0^1{\frac{s^t+s^{-t}}{s\left( s+s^{-1} \right) ^3}\mathrm{d}x}
=2\int_0^{\infty}{\frac{s^{2+t}+s^{2-t}}{\left( s^2+1 \right) ^3}\mathrm{d}x}
\\&
\stackrel{s^2=u}{\begin{CD}@=\end{CD}}\int_0^{\infty}{\frac{u^{\frac{3+t}{2}-1}+u^{\frac{3-t}{2}-1}}{\left( u+1 \right) ^{\frac{3+t}{2}+\frac{3-t}{2}}}\mathrm{d}x}=2\mathrm{B}\left( \frac{3+t}{2}, \frac{3-t}{2} \right)
\\&
=\Gamma \left( \frac{3+t}{2} \right) \Gamma \left( \frac{3-t}{2} \right)
=\frac{\pi \left( 1-t^2 \right)}{4\cos \left( \frac{\pi}{2}t \right)}
\end{align*}
Then I integrated that from 0 to 1.
\begin{align*}
I&=\int_0^1{I'\left( t \right) \mathrm{d}t}=\int_0^1{\frac{\pi \left( 1-t^2 \right)}{4\cos \left( \frac{\pi}{2}+\frac{\pi}{2}t \right)}\mathrm{d}t}
\\&
\stackrel{\frac{t\pi}{2}\rightsquigarrow t}{\begin{CD}@=\end{CD}}\frac{1}{2\pi ^2}\int_0^{\frac{\pi}{2}}{\frac{\pi ^2-4t^2}{\cos \left( t \right)}\mathrm{d}t}\stackrel{\frac{\pi}{2}-t\rightsquigarrow t}{\begin{CD}@=\end{CD}}\frac{2}{\pi ^2}\int_0^{\frac{\pi}{2}}{\frac{t\left( \pi -t \right)}{\sin \left( t \right)}\mathrm{d}t}
\\&
\stackrel{\mathrm{I.B.P}}{\begin{CD}@=\end{CD}}\left. \frac{2}{\pi ^2}t\left( \pi -t \right) \ln \left( \tan \left( \frac{t}{2} \right) \right) \right|_{0}^{\frac{\pi}{2}}+\frac{2}{\pi ^2}\int_0^{\frac{\pi}{2}}{\left( 2t-\pi \right) \ln \left( \tan \left( \frac{t}{2} \right) \right) \mathrm{d}t}
\\&
\stackrel{\frac{t}{2}\rightsquigarrow t}{\begin{CD}@=\end{CD}}\frac{4}{\pi ^2}\int_0^{\frac{\pi}{4}}{\left( 4t-\pi \right) \ln \left( \tan \left( t \right) \right) \mathrm{d}t}
\\&
=\underset{t\rightsquigarrow t}{\underbrace{\frac{4}{\pi ^2}\int_0^{\frac{\pi}{4}}{\left( 4t-\pi \right) \ln \left( \sin \left( t \right) \right) \mathrm{d}t}}}-\underset{t\rightsquigarrow \frac{\pi}{2}-t}{\underbrace{\frac{4}{\pi ^2}\int_0^{\frac{\pi}{4}}{\left( 4t-\pi \right) \ln \left( \cos \left( t \right) \right) \mathrm{d}t}}}
\\&
=\frac{4}{\pi ^2}\int_0^{\frac{\pi}{4}}{\left( 4t-\pi \right) \ln \left( \sin \left( t \right) \right) \mathrm{d}t}+\frac{4}{\pi ^2}\int_{\frac{\pi}{4}}^{\frac{\pi}{2}}{\left( 4t-\pi \right) \ln \left( \sin \left( t \right) \right) \mathrm{d}t}
\\&
=\frac{16}{\pi ^2}\int_0^{\frac{\pi}{2}}{t\ln \left( \sin \left( t \right) \right) \mathrm{d}t}-\frac{4}{\pi}\int_0^{\frac{\pi}{2}}{\ln \left( \sin \left( t \right) \right) \mathrm{d}t}
\end{align*}
the right one evaluates to $-\frac{1}{2}\ln \left( 2 \right) $. Plus, using the fourier expansion of $\ln \left( \sin \left( t \right) \right) $
\begin{align*}
I&=\frac{16}{\pi ^2}\int_0^{\frac{\pi}{2}}{t\ln \left( \sin \left( t \right) \right) \mathrm{d}t}+\frac{1}{2}\ln \left( 2 \right)
\\&
=-\frac{16}{\pi ^2}\int_0^{\frac{\pi}{2}}{\left( t\ln \left( 2 \right) +t\sum_{n=1}^{\infty}{\frac{\cos \left( 2nt \right)}{n}} \right) \mathrm{d}t}+\frac{1}{2}\ln \left( 2 \right)
\\&
=-\frac{16}{\pi ^2}\sum_{n=1}^{\infty}{\frac{1}{n}}\int_0^{\frac{\pi}{2}}{t\cos \left( 2nt \right) \mathrm{d}t}=\frac{4}{\pi ^2}\sum_{n=1}^{\infty}{\frac{1-\cos \left( \pi n \right)}{n^3}}
\\&
=\frac{8}{\pi ^2}\sum_{n=1}^{\infty}{\frac{1}{\left( 2n-1 \right) ^3}}=\frac{8}{\pi ^2}\frac{7}{8}\zeta \left( 3 \right) =\frac{7}{\pi ^2}\zeta \left( 3 \right)
\end{align*}