The following is a proof that,
$I=\displaystyle\int_0^1 \dfrac{\ln x\ln(1+x^2)}{1+x^2}dx=2\int_0^{\tfrac{\pi}{4}} \big(\ln(\cos x)\big)^2dx-\dfrac{\pi(\ln 2)^2}{2}+\dfrac{\pi^3}{48}$
Let $\displaystyle J=\int_0^{\tfrac{\pi}{2}}\left(\ln(\cos x)\right)^2 dx$
Perform the change of variable $y=\dfrac{\pi}{2}-x$,
$\boxed{\displaystyle J=\int_0^{\tfrac{\pi}{2}}\left(\ln(\sin x)\right)^2 dx}$
$\displaystyle J=\int_0^{\tfrac{\pi}{4}}\left(\ln(\sin x)\right)^2 dx+\int_{\tfrac{\pi}{4}}^{\tfrac{\pi}{2}}\left(\ln(\sin x)\right)^2 dx$
In the second integral, perform the change of variable $y=\dfrac{\pi}{2}-x$,
$\boxed{\displaystyle J=\int_0^{\tfrac{\pi}{4}}\left(\ln(\cos x)\right)^2 dx+\int_{0}^{\tfrac{\pi}{4}}\left(\ln(\sin x)\right)^2 dx}$
Since for $a,b$ real, $2(a^2+b^2)=(a+b)^2+(a-b)^2$ then,
$\displaystyle 2J=\int_0^{\tfrac{\pi}{4}}\Big(\ln(\cos x)+\ln(\sin x)\Big)^2 dx+\int_0^{\tfrac{\pi}{4}}\Big(\ln(\cos x)-\ln(\sin x)\Big)^2 dx$
$\displaystyle \int_0^{\tfrac{\pi}{4}}\Big(\ln(\cos x)+\ln(\sin x)\Big)^2 dx=\int_0^{\tfrac{\pi}{4}}\Big(\ln(\sin(2x))-\ln 2\Big)^2 dx$
In the latter integral, perform the change of variable $y=2x$,
$\displaystyle \int_0^{\tfrac{\pi}{4}}\Big(\ln(\sin(2x))-\ln 2\Big)^2 dx=\dfrac{1}{2}J-\ln 2 \int_0^{\tfrac{\pi}{2}}\ln(\sin x)dx+\dfrac{1}{2}\int_0^{\tfrac{\pi}{2}}(\ln 2)^2dx$
$\displaystyle\int_0^{\tfrac{\pi}{2}}\ln(\sin x)dx=\int_0^{\tfrac{\pi}{4}}\ln(\sin x)dx+\int_{\tfrac{\pi}{4}}^{\tfrac{\pi}{2}}\ln(\sin x)dx$
In the latter integral, perform the change of variable $y=\dfrac{\pi}{2}-x$,
$\displaystyle\int_0^{\tfrac{\pi}{2}}\ln(\sin x)dx=\int_0^{\tfrac{\pi}{4}}\ln(\sin x)dx+\int_{0}^{\tfrac{\pi}{4}}\ln(\cos x)dx$
Moreover,
$\displaystyle\int_0^{\tfrac{\pi}{2}}\ln(\sin x)dx=\int_0^{\tfrac{\pi}{2}} \ln\left(2\sin\left(\dfrac{x}{2}\right)\cos\left(\dfrac{x}{2}\right)\right)dx$
In the latter integral, perform the change of variable $y=\dfrac{x}{2}$,
$\displaystyle\int_0^{\tfrac{\pi}{2}}\ln(\sin x)dx=2\int_0^{\tfrac{\pi}{4}}\ln 2 dx+2\int_0^{\tfrac{\pi}{4}}\ln(\cos x)dx+2\int_0^{\tfrac{\pi}{4}}\ln(\sin x)dx$
Therefore,
$\displaystyle\int_0^{\tfrac{\pi}{2}}\ln(\sin x)dx=\dfrac{\pi\ln 2}{2}+2\displaystyle\int_0^{\tfrac{\pi}{2}}\ln(\sin x)dx$
$\boxed{\displaystyle\int_0^{\tfrac{\pi}{2}}\ln(\sin x)dx=-\dfrac{\pi\ln 2}{2}}$
Therefore,
$\boxed{\displaystyle \int_0^{\tfrac{\pi}{4}}\Big(\ln(\cos x)+\ln(\sin x)\Big)^2 dx=\dfrac{1}{2}J+\dfrac{\pi(\ln 2)^2}{2}+\dfrac{\pi(\ln 2)^2}{4}=\dfrac{1}{2}J+\dfrac{3\pi(\ln 2)^2}{4}}$
$\displaystyle\int_0^{\tfrac{\pi}{4}}\Big(\ln(\cos x)-\ln(\sin x)\Big)^2 dx=\int_0^{\tfrac{\pi}{4}}(\ln(\tan x))^2 dx$
In the latter integral, perform the change of variable $y=\tan x$,
$\displaystyle\int_0^{\tfrac{\pi}{4}}\Big(\ln(\cos x)-\ln(\sin x)\Big)^2 dx=\int_0^1 \dfrac{(\ln x)^2}{1+x^2}dx=\sum_{n=0}^{\infty} \int_0^1 (-1)^n x^{2n}(\ln x)^2 dx=\\
\displaystyle 2\sum_{n=0}^{+\infty}\dfrac{(-1)^n}{(2n+1)^3}=2\beta(3)$
therefore,
$\boxed{\displaystyle\int_0^{\tfrac{\pi}{4}}\Big(\ln(\cos x)-\ln(\sin x)\Big)^2 dx=\dfrac{\pi^3}{16}}$
therefore,
$2J=\dfrac{1}{2}J+\dfrac{3\pi(\ln 2)^2}{4}+\dfrac{\pi^3}{16}$
$\boxed{J=\dfrac{\pi(\ln 2)^2}{2}+\dfrac{\pi^3}{24}}$
$\displaystyle\int_0^{\tfrac{\pi}{4}}\ln(\sin x)\ln(\cos x)dx=-\dfrac{1}{2}\left(\int_0^{\tfrac{\pi}{4}}\Big(\ln(\cos x)-\ln(\sin x)\Big)^2 dx-\int_0^{\tfrac{\pi}{4}}\left(\ln(\cos x)\right)^2 dx-\int_{0}^{\tfrac{\pi}{4}}\left(\ln(\sin x)\right)^2 dx\right)=\\
-\dfrac{1}{2}\left(\dfrac{\pi^3}{16}-J\right)
$
therefore,
$\boxed{\displaystyle\int_0^{\tfrac{\pi}{4}}\ln(\sin x)\ln(\cos x)dx=\dfrac{\pi(\ln 2)^2}{4}-\dfrac{\pi^3}{96}}$
Perform the change of variable $x=\tan y$,
$\displaystyle I=\int_0^{\tfrac{\pi}{4}} \ln(\tan x)\ln\left(\dfrac{1}{(\cos x)^2}\right)dx=2\int_0^{\tfrac{\pi}{4}} \big(\ln(\cos x)\big)^2dx-2\int_0^{\tfrac{\pi}{4}} \ln(\cos x)\ln(\sin x)dx$
Finally,
$\boxed{I=\displaystyle 2\int_0^{\tfrac{\pi}{4}} \big(\ln(\cos x)\big)^2dx-\dfrac{\pi(\ln 2)^2}{2}+\dfrac{\pi^3}{48}}$