You can see in :
- Gaisi Takeuti, Proof Theory (2nd ed - 1987), page 10, the quantifiers rules for sequent calculus :
$${
\Gamma \to \Delta, \ F(y)
\over
\Gamma \to \Delta, \ \forall xF(x)
} (\forall \text {-right})$$
where $y$ does not occur in the lower sequent.
Being one of the "primitive" rule of the sequent calculus, it is enough to consider $\Delta = \emptyset$ in the $(\forall$-right) rule and we have the requested inference.
In this case, the restriction on $y$ not free in the lower sequent, amounts to $y$ not free in $\Gamma$ nor in $F$.
The rule corresponds to the $\forall$-introduction rule of natural deduction :
$${
A(y/x)
\over
\forall xA
} (\forall \text {I})$$
The rule of universal introduction has the variable restriction that $y$ must not occur free in any assumption that $A(y/x)$ depends on nor in $\forall xA$. [...] The variable restriction guarantees that $y$ stands for an "arbitrary individual" for which $A$ holds, which is the direct ground for asserting the universal proposition.
See : Sara Negri & Jan von Plato, Structural Proof Theory (2001), page 64.
Both proof systems need the restriction on the so-called eigenvariable $x$ of the rule, in order to avoid proving invalid formulae.
Consider the following counter-example, assuming $\Gamma = \{ x = 0 \}$ and $\Delta = \emptyset$.
Clearly :
$x=0 \vdash x=0$
and thus, if we disregard the restriction, we can conclude with :
$x=0 \vdash \forall x(x=0)$.
But both natural deduction and sequent calculus have no restrictions on the "deduction theorem" (i.e. the rules $\to$-introduction and $\Rightarrow$-right, respectively) and thus, from the above deduction, we can infer the invalid :
$\vdash (x=0) \to \forall x(x=0)$.
In :
there is a "weird way" to present sequent calculus. The quantifier $\forall$ is primitive in the syntax [see page 16] but the rules of the calculus regarding it are all "derived".
In order to do this, we have to supplement the calculus with the "usual" equivalence between $\forall$ and $\lnot \exists \lnot$.
If so, we have the following derivation :
0) $\Gamma \ \ \varphi$ --- premise
1) $\Gamma \ \ \alpha \ \ \varphi$ --- for some $\alpha \in \Gamma$
2) $\Gamma \ \ \lnot \varphi \ \ \lnot \alpha$ --- (Cp) [contraposition, page 64]
3) $\Gamma \ \ \exists x \lnot \varphi \ \ \lnot \alpha$ --- 5.1(b) [page 68 : here we need the restriction on $x$ not free in $\Gamma, \alpha$
4) $\Gamma \ \ \lnot \lnot \alpha \ \ \lnot \exists x \lnot \varphi$ --- (Cp)
5) $\Gamma \ \ \alpha \ \ \lnot \exists x \lnot \varphi$ --- 3.6(a1) [page 65 : double negation]
6) $\Gamma \ \ \lnot \exists x \lnot \varphi$ --- $\alpha \in \Gamma$
7) $\Gamma \ \ \forall x \varphi$ --- from 6) by equivalence of $\lnot \exists \lnot$ and $\forall$ : $x$ not free in $\Gamma$.
You can compare with :
that has a similar "austere" presentation of sequent calculus.
$\forall$ is primitive and the rules for quantifiers [page 92; see also page 79] are : $\forall$-elimination ($\forall1$) and $\forall$-introduction :
$${
X \vdash \alpha^y_x
\over
X \vdash \forall x \alpha
} \ (\forall 2)$$
with $y \notin \text {free} X \cup \text {var} \alpha$.
The rules for $\exists$ are derivable [see Exercise 1, page 97].
In this case, it is explicitly said [page 56] that :
Other logical symbols serve throughout merely as abbreviations, namely $∃x \alpha := ¬∀x¬ \alpha$, [...].
Note : the symbol $\varphi^y_x$ stands for [see page 59] the formula that results from replacing all free occurrences of $x$ in $\varphi$ by $y$.