It is easy by operator algebra. Let the Shift, Triple $\mathbb C$-linear operators $\rm\ S\:n\: :=\: n+1,\ \ T\:n\: :=\: 3\:n\: $ act on fibonacci's numbers by $\rm\ S\:f(a\:n+b) = f(a\:(n+1)+b)\ $ and $\rm\ T\:f(a\:n+b) = f(3\:a\:n+b)\:.$ Below I show a general method that works for any Lucas sequence $\rm\:f(n)\:$ that involves only simple high-school polynomial arithmetic (albeit noncommutative). Namely, one employs a commutation rule $\rm\: TS\:\to\: (a\ S + b)\ T\ $ to shift $\rm\:T\:$ past powers of $\rm\:S\:,\:$ in order to transmute the known recurrence $\rm\ q(S)\ f(n)\: =\: 0\ $ into $\rm\ \bar{q}(S)\:T\:f(n)\:=\:0\:,\ $ the sought recurrence for $\rm\ T\:f(n)\: =\: f(3\:n)\:.\:$
We know $\rm\ q(S)\ f(n) := (S^2 - S - 1)\ f(n)\: =\: f(n+2) - f(n+1) - f(n)\: =\: 0\:.\: $ We seek an analogous recurrence $\rm\ \bar{q}(S)\ T\: f(n)\ =\ 0\ $ for $\rm\ T\:f(n) = f(3\:n)\:,\:$ and some polynomial $\rm\:\bar{q}(S)\:.\: $ Since clearly we have that $\rm\ T\:q(S)\ f(n)\: =\: 0\:,\: $ it suffices to somehow transmute this equation by shifting $\rm\:T\:$ past $\rm\:q(S)\:$ to yield $\rm\:\bar{q}(S)\:T\:f(n)\:=\:0\:.\:$ To do this, it suffices to find some commutation identity $\rm T\:S\: =\: r(S)\: T\ $ to enable us to shift $\rm\:T\:$ past $\rm\:S$'s in each monomial $\rm\ S^{\:i}\: f(n)\: =\: f(n+i)\:$ from $\rm\:q(S)\:.\:$ The sought commutation identity arises very simply: iterate the recurrence for $\rm\:f(n)\:$ so to rewrite
$\rm\ ST\ f(n)\ =\ f(3\:n+3)\ $ as a linear combination of $\rm\ f(3\:n+1) = TS\ f(n)\:,\: $ $\rm\ f(3\:n) = T\ f(n)\:,\:$ viz.
$\rm\ \ \ ST\ f(n+i)\ =\ f(3n+3+i)\ =\ f(3n+2+i) + f(3n+1+i)\ =\ 2\ f(3n+1+i) + f(3n+i) $
$\rm\ \ \ \phantom{ST\ f(n+i)}\ =\ (2\:TS+T)\ f(n+i)\quad$ for all $\rm\:i\in \mathbb Z\:$
$\rm\ 2\:TS\ f(n+i)\ =\ (S-1)\:T\ f(n+i)\:,\ $ i.e. $\rm\ 2\:TS\ =\ (S-1)\:T\:,\ $ the sought commutation identity.
Thus $\rm\qquad\quad\:\ 0\ =\ 4\: T\: (S^2 - S - 1)\ f(n)\ $
$\rm\qquad\qquad\qquad\quad\ \ =\ (2\:(2TS)S - 2\:(2TS) - 4\:T)\ f(n) $
$\rm\qquad\qquad\qquad\quad\ \ =\ ((S-1)\:2TS - 2\:(S-1)\:T - 4\:T)\ f(n)$
$\rm\qquad\qquad\qquad\quad\ \ =\ ((S-1)^2 - 2\:(S-1)\: - 4)\ T\: f(n)$
$\rm\qquad\qquad\qquad\quad\ \ =\ (S^2 - 4\ S - 1)\ T\: f(n)$
$\quad$ i.e. $\rm\qquad\quad\: 0\ =\ f(3(n+2)) - 4\ f(3(n+1)) - f(3\:n)\qquad $ QED
NOTE $\ $ Precisely the same method works for any Lucas sequence $\rm\:f(n)\:,\:$ i.e. any solution of $\rm\ 0\ =\ (S^2 + b\ S + c)\ f(n)\ =\ f(n+2) + b\ f(n+1) + c\ f(n)\ $ for constants $\rm\:b,\:c\:,\:$ and for any multiplication operator $\rm\:T\:n = k\ n\:$ for $\rm\:k\in \mathbb N\:.\:$ As above, we obtain a commutation identity by iterating the recurrence (or powering its companion matrix), in order to rewrite
$\rm\ ST\ f(n)\ =\ f(k\:n+k)\ $ as a $\rm\:\mathbb C$-linear combination of $\rm\ f(kn+1) = TS\ f(n)\ $ and $\rm\ f(kn) = T\ f(n)\:$
say $\rm\ \ ST\ f(n)\ =\ f(k\:n+k)\ =\ a\ f(k\:n+1) + d\ f(k\:n)\ =\ (a\ TS + d\ T)\ f(n)\ \ $ for some $\rm\:a,d\in \mathbb C$
$\rm\:\Rightarrow\ a\ TS\ f(n) =\ (S-d)\ T\ f(n)\ \Rightarrow\ a\ TS\ =\ (S-d)\ T\ $ on $\rm\ S^{\:i}\: f(n)\ $ as above.
Again, this enables us to transmute the recurrence for $\rm\:f(n)\:$ into one for $\rm\:T\:f(n) = f(k\:n)\:$ by simply commuting $\rm\:T\:$ past all $\rm\:S^i\:$ terms. Hence the solution involves only simple polynomial arithmetic (but, alas, the notation obscures the utter simplicity of the method).