# What are some applications outside of mathematics for algebraic geometry?

Are there any results from algebraic geometry that have led to an interesting "real world" application?

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community-wiki? Genuine question. –  Jamie Banks Jul 23 '10 at 23:42
Algebraic geometry is incredibly important in bioinformatics and DNA/taxonomy stuff. I don't actually understand the details myself which is why I haven't written an answer. –  Noah Snyder Jul 24 '10 at 0:03
@Katie, good call on the community-wiki –  Jonathan Fischoff Jul 24 '10 at 1:16

The following slideshow gives an explanation of how algebraic geometry can be used in phylogenetics. See also this post of Charles Siegel on Rigorous Trivialties. This is not an area I've looked at in much detail at all, but it appears that the idea is to use a graph to model evolutionary processes, and such that the "transition function" for these processes is given by a polynomial map. In particular, it'd be of interest to look at the potential outcomes, namely the image of the transition function; that corresponds to the image of a polynomial map (which is not necessarily an algebraic variety, but it is a constructible set, so not that badly behaved either). (In practice, though, it seems that one studies the closure, which is a legitimate algebraic set.)

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Bernd Sturmfels at Berkeley has done quite a bit of work on applying algebraic geometry to just these sort of phylogenetics problems (but I don't know enough about the work to comment intelligently). –  Jamie Banks Jul 24 '10 at 0:33
@Katie Here is a summary article in this direction math.berkeley.edu/~bernd/ClayBiology.pdf –  BBischof Jul 24 '10 at 1:15
Something specific in that vein: Kempe's Universality Theorem gives that any bounded algebraic curve in $\mathbb{R}^2$ is the locus of some linkage. The "locus of a linkage" being the path drawn out by all the vertices of a graph, where the edge lengths are all specified and one or more vertices remains still.