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This is for a project which I've been trying to find some information for Covariance matrix and correlation matrix.

I understand that for a $n \times n$ matrix $A, AA^T$ will give me the covariance matrix.

Is there any relationship between the covariance and correlation matrix?

Sorry maybe I wasn't clear.

I wanted to use Cholesky decomposition to generate correlated variables from random variables. I do know how to do it using matlab. And I understand how it works for 2 variables. But when I scale up the matrix to $n \times n$ instead of $2 \times 2$, I am not sure how it will work out.

would appreciate if someone could provide more hint on the mathematics.

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Suppose you have a random vector $\mathbf{g}$, then the covariance matrix of $\mathbf{g}$ is defined as $$\mathbf{K}=\mathbf{E}\{(\mathbf{g}-\bar{\mathbf{g}})(\mathbf{g}-\bar{\mathbf{g}})^{\dagger}\}$$ where $\mathbf{E}$ denotes expectation, $\bar{\mathbf{g}}$ denotes the mean of $\mathbf{g}$, $\dagger$ means transpose for real random vector, and conjugate transpose for complex random vector.

The correlation matrix is $$\mathbf{R}=\mathbf{E}\{\mathbf{g}\mathbf{g}^{\dagger}\}$$

So we have $$\mathbf{K}=\mathbf{R}-\bar{\mathbf{g}}\bar{\mathbf{g}}^{\dagger}$$

For zero-mean random vectors $\mathbf{K}=\mathbf{R}$.

EDIT: for another definition where the correlation matrix is the normalized covariance matrix, the relation is $$\mathbf{R}_{ij}=\frac{\mathbf{K}_{ij}}{\sigma_i \sigma_j}$$ where $\sigma_i, \sigma_j$ are the standard deviation of $\mathbf{g}_i$ and $\mathbf{g}_j$, respectively.

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"correlation matrix" can mean that, but a more usual meaning is the normalized covariance matrix (i.e. correlation factors) – leonbloy Aug 26 '12 at 4:02

From a matrix algebra point of view the answer is fairly simple. Assume your covariance matrix is $\Sigma$ and let

$$ D =\sqrt{ \text{diag}\left( {\Sigma} \right)} $$

then the correlation matrix is given by $$ \varrho = D^{-1}\Sigma D^{-1} $$

Edit: fixed to include square root

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Strictly speaking, $\text{diag}(\Sigma)$ is a square matrix, isn't it? (Otherwise its inverse is not defined). But then, there exists nothing like a square root of a matrix. Of course, I see that you have to take the sqrt of each element and put them back in a diagonal matrix. But has someone a more pure notation using matrices? – hplieninger Sep 24 '13 at 8:24

Matlab has a function cov2corr to extract the correlation matrix from covariance matrix. If you're already using Matlab, no need to reinvent the wheel. The implementation of the function is similar to chaohuang's answer above (with some error checking).

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Yes there is a one-to-one relation between two matrices. Please check:

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Cribbing from the answer by Brian B., assume your covariance matrix is Σ and let

D = sqrt(diag(Σ)), a vector of square roots of the diagonal of Σ.

then the correlation matrix is given by ϱ = D-inverse Σ D-inverse-prime

D, here, is a p x 1 vector (from the diagonal of Σ) and its inverse is the item by item inverse of D -- i.e., vector of {one over element} for each element.

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