$$
\begin{align}
\int_{-a}^a\sqrt{a^2-x^2}\log(\sqrt{a^2-x^2})\,\mathrm{d}x
&=a^2\int_{-1}^1\sqrt{1-x^2}\log(\sqrt{1-x^2})\,\mathrm{d}x\\
&+a^2\log(a)\int_{-1}^1\sqrt{1-x^2}\,\mathrm{d}x\\
&=a^2\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\cos^2(t)\log(\cos(t))\,\mathrm{d}t\\
&+a^2\log(a)\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\cos^2(t)\,\mathrm{d}t\tag{1}
\end{align}
$$
The standard trick is to note that
$$
\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\cos^2(t)\,\mathrm{d}t=\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\sin^2(t)\,\mathrm{d}t\tag{2}
$$
and add the left side to both sides and divide by $2$:
$$
\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\cos^2(t)\,\mathrm{d}t=\frac\pi2\tag{3}
$$
Now it gets just a bit trickier, but not so bad. Integration by parts yields
$$
\begin{align}
\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\cos^2(t)\log(\cos(t))\,\mathrm{d}t
&=\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\cos(t)\log(\cos(t))\,\mathrm{d}\sin(t)\\
&=\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\sin^2(t)\log(\cos(t))+\sin^2(t)\,\mathrm{d}t\tag{4}
\end{align}
$$
Now adding the left hand side of $(4)$ to both sides and dividing by $2$ after applying $(2)$ and $(3)$ gives
$$
\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\cos^2(t)\log(\cos(t))\,\mathrm{d}t
=\frac12\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\log(\cos(t))\,\mathrm{d}t+\frac\pi4\tag{5}
$$
Next, note that
$$
\begin{align}
\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\log(\cos(t))\,\mathrm{d}t
&=\frac12\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\log(\cos^2(t))\,\mathrm{d}t\\
&=\frac12\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\log(\sin^2(t))\,\mathrm{d}t\tag{6}
\end{align}
$$
Adding the last two parts of $(6)$ and dividing by $2$ yields
$$
\begin{align}
\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\log(\cos(t))\,\mathrm{d}t
&=\frac14\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\log(\tfrac14\sin^2(2t))\,\mathrm{d}t\\
&=\frac18\int_{-\pi}^{\pi}\log(\tfrac14\sin^2(t))\,\mathrm{d}t\\
&=\frac14\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\log(\tfrac14\sin^2(t))\,\mathrm{d}t\tag{7}
\end{align}
$$
Equating $(6)$ and $(7)$ and subtracting half of $(6)$ from both and multiplying by $2$ gives us
$$
\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\log(\cos(t))\,\mathrm{d}t
=-\pi\log(2)\tag{8}
$$
Now it's all substituting back. Plug $(8)$ into $(5)$ to get
$$
\int_{-\Large\frac\pi2}^{\Large\frac\pi2}\cos^2(t)\log(\cos(t))\,\mathrm{d}t
=\frac\pi4-\frac\pi2\log(2)\tag{9}
$$
To finish off, plug $(3)$ and $(9)$ into $(1)$:
$$
\begin{align}
\int_{-a}^a\sqrt{a^2-x^2}\log(\sqrt{a^2-x^2})\,\mathrm{d}x
&=a^2\left(\frac\pi4-\frac\pi2\log(2)+\frac\pi2\log(a)\right)\\
&=\pi\frac{a^2}{4}\log\left(e\frac{a^2}{4}\right)\tag{10}
\end{align}
$$